spykingcircus_utils module¶

spykingcircus_utils.get_channel_groups_from_spykingcircus_probefile(probe_filepath)¶

Get the channel group from Spyking Circus probe file

Parameters:	probe_filepath : str Path of the probe file
Returns:	chan_grp_list : list Channel group list

spykingcircus_utils.get_templates_from_spykingcircus_file(spykingcircus_result_dirpath, filename, unit_pos, gain=4)¶

Get the templates (shapes) for a specific unit. Designed for tetrode recordings, this return the template of the unit on each wire of the tetrode. It requires the .basis.hdf5, .templates.hdf5 and the .clusters.hdf5 files from Spyking Circus.

Parameters:	spykingcircus_result_dirpath : str Path where the Spyking-Circus files are stored filename : str Base name of the Spyking-Circus results, without the extension unit_pos : int Number of the unit gain : float (default: 4) Gain of the acquisition device - For Blackrock, set the gain to 4
Returns:	r_temp_i_tetrode : array Unit’s template on each wire of the tetrode

spykingcircus_utils.get_unit_preferred_electrode(spykingcircus_dirpath, results_filename)¶

Get the preferred electrode for all units. Reads the clusters Spyking Circus file.

Parameters:	spykingcircus_dirpath : str Path of the Spyking Circus results directory results_filename : str
Returns:	pref_el : array Preferred electrode for all units