.. note::
    :class: sphx-glr-download-link-note

    Click :ref:`here <sphx_glr_download_auto_examples_NeoEpoch_examples_create_neo_epoch.py>` to download the full example code
.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_NeoEpoch_examples_create_neo_epoch.py:


=====================
Neo Epoch - ex_0
=====================

This example shows how to create NeoEpoch




.. code-block:: python


    from neoStructures import NeoAll, NeoEpoch
    import numpy as np


Replace the next variables with your paths



.. code-block:: python


    spykingcircus_dirpath = r'C:\Users\deudon\Desktop\SpikeSorting\_Data\002RM_day4_pointes\spykingcircus_results'
    results_filename = r'20150325-103311-001_0'
    event_filepath = r'C:\Users\deudon\Desktop\SpikeSorting\_Data\002RM_day4_pointes\Events\eventFile_part.csv'
    signal_dirpath = r'C:\Users\deudon\Desktop\SpikeSorting\_Data\002RM_day4_pointes\signal\monopolaire_5kHz_d4_post_crise'
    probe_filepath = r'C:\Users\deudon\Desktop\SpikeSorting\_Data\002RM_day4_pointes\spykingcircus_paramfiles\002_RM.prb'
    figure_dirpath = r'C:\Users\deudon\Desktop\SpikeSorting\_Data\002RM_day4_pointes\fig'
    artefact_csv_filepath = r'C:\Users\deudon\Desktop\SpikeSorting\_Data\002RM\Artefact_EDF_reconstruction_d1.csv'


Epoching parameters



.. code-block:: python

    csv_delimiter = ';'
    t_pre, t_post = 1, 1
    t_max, srate = -1, 30000
    epoch_t_start = np.array([-0.500, -0.250, -0.050, 0.050, 0.250])
    epoch_duration = np.array([0.250, 0.200, 0.100, 0.200, 0.250])
    epoch_names = ['Pre-IED baseline', 'Pre-IED', 'IED', 'Slow wave', 'Post-IED']


First create a NeoAll instance



.. code-block:: python


    neo_all = NeoAll(spykingcircus_dirpath, results_filename, probe_filepath, signal_dirpath=signal_dirpath,
                    event_filepath=event_filepath, fig_dirpath=figure_dirpath, save_fig=1)


And create the NeoEpoch instance



.. code-block:: python


    neo_epoch = NeoEpoch(neo_all, event_filepath=event_filepath, time_pre=0.2, time_post=0.2)
    print(neo_epoch)


You can save it with the save method :



.. code-block:: python


    neo_epoch.save(r'C:\Users\deudon\Desktop\SpikeSorting\_Scripts\_Python\pySpikeAnalysis\pySpikeAnalysis\sample_data')

**Total running time of the script:** ( 0 minutes  0.000 seconds)


.. _sphx_glr_download_auto_examples_NeoEpoch_examples_create_neo_epoch.py:


.. only :: html

 .. container:: sphx-glr-footer
    :class: sphx-glr-footer-example



  .. container:: sphx-glr-download

     :download:`Download Python source code: create_neo_epoch.py <create_neo_epoch.py>`



  .. container:: sphx-glr-download

     :download:`Download Jupyter notebook: create_neo_epoch.ipynb <create_neo_epoch.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

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